Includes bibliographical references and index.

Algorithms for bioinformatics / Bertil Schmidt -- Introduction to GPGPUs and massively-threaded programming / Rob Farber -- FPGA: architecture and programming / Douglas Maskell -- Parallel algorithms for alignments on the cell be / Abhinav Sarje, Srinivas Aluru -- Orchestrating the phylogenetic likelihood function on emerging parallel architectures / Alexandros Stamatakis -- Parallel bioinformatics algorithms for CUDA-enabled GPUs / Yongchao Liu, Bertil Schmidt, Douglas Maskell -- CUDA error correction method for high-throughput short-read sequencing data / Haixiang Shi, Weiguo Liu, Bertil Schmidt -- FPGA acceleration of seeded similarity search / Arpith Jacob, Joseph Lancaster, Jeremy Buhler, Roger Chamberlain -- Seed-based parallel protein sequence comparison combining multithreading, GPU and FPGA technologies / Dominique Lavenier, Van-Hoa Nguyen -- Database searching with profile hidden markov models on reconfigurable and many-core architectures / John Paul Walters, Vipin Chaudhary, Bertil Schmidt -- Cobacobana: a massively parallel FPGA-based computer architecture / Manfred Schimmler, Lars Wienbrandt, Tim G�uneysu, Jost Bissel -- Accelerating string set matching for bioinformatics using FPGA hardware / Yoginder S. Dandass -- Reconfigurable neural system and its application to dimeric protein binding site identification / Feng Lin, Maria Stepanova -- Parallel FPGA search engine for protein identification / Daniel Coca, Istvan Bogdan, RoBert J. Beynong

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